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…t to test coo_array functionnality
… columns. Merge remote-tracking branch 'origin/master' into geomloss_update
- Added position tracking maps (_arc_to_out_pos, _arc_to_in_pos) for O(1) arc lookups - Modified nextOut() and nextIn() to use position maps instead of linear search
Codecov Report❌ Patch coverage is Additional details and impacted files@@ Coverage Diff @@
## master #785 +/- ##
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- Coverage 97.07% 97.07% -0.01%
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Files 107 107
Lines 22142 22156 +14
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+ Hits 21495 21507 +12
- Misses 647 649 +2 🚀 New features to boost your workflow:
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rflamary
reviewed
Dec 16, 2025
RELEASES.md
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| @@ -7,9 +7,11 @@ This new release adds support for sparse cost matrices in the exact EMD solver. | |||
| #### New features | |||
| - Add support for sparse cost matrices in exact EMD solver `ot.emd` and `ot.emd2` (PR #778) | |||
| - Migrate backend from deprecated `scipy.sparse.coo_matrix` to modern `scipy.sparse.coo_array` API (PR #TBD) | |||
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Fix PR number above and add PR numebr here
RELEASES.md
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| #### Closed issues | ||
| - Add support for sparse cost matrices in EMD solver (PR #778, Issue #397) | ||
| - Fix O(n³) performance bottleneck in sparse bipartite graph arc iteration |
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Types of changes
Motivation and context / Related issue
Sparse EMD solver was 10-40x slower than dense solver on full matrices due to O(n³) complexity bug in arc iteration. The
nextOut()andnextIn()methods insparse_bipartitegraph.hwere performing linear search through arc lists on every call during pivot selection.How has this been tested (if it applies)
PR checklist